{
  "_id": "6a23d642530b9bc726be5143",
  "Package": "ConFluxPro",
  "Type": "Package",
  "Title": "Soil Gas Analysis and Flux Modeling",
  "Version": "1.3.1.9000",
  "Authors@R": "c(\nperson(\"Valentin\",\"Gartiser\",email = \"code@valentingartiser.de\",role = c(\"aut\", \"cre\", \"cph\"),\ncomment = c(ORCID = \"0000-0001-5320-374X\")),\nperson(\"Martin\",\"Maier\",email = \"martin.freudiger@uni-goettingen.de\",role = c(\"ctb\"),\ncomment = c(ORCID = \"0000-0002-7959-0108\")),\nperson(\"Verena\",\"Lang\",email = \"verena.lang@forst.bwl.de\",role = c(\"ctb\"))\n)",
  "Description": "Model soil gas fluxes with the Flux-Gradient Method. It\nincludes functions for data handling, a forward and an inverse\nmodel for flux modeling and methods for calibration and\nuncertainty estimation. For more details see Gartiser et al.\n(2025a) <doi:10.21105/joss.08094> and Gartiser et al. (2025b)\n<doi:10.1111/ejss.70126>.",
  "License": "GPL (>= 3)",
  "Encoding": "UTF-8",
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  "VignetteBuilder": "knitr, rmarkdown",
  "Roxygen": "list(markdown = TRUE)",
  "URL": "https://confluxpro.valentingartiser.de/,\nhttps://github.com/valentingar/ConFluxPro,\nhttps://valentingar.github.io/ConFluxPro/",
  "BugReports": "https://github.com/valentingar/ConFluxPro/issues",
  "Config/pak/sysreqs": "libicu-dev",
  "Repository": "https://valentingar.r-universe.dev",
  "Date/Publication": "2025-07-11 07:10:26 UTC",
  "RemoteUrl": "https://github.com/valentingar/confluxpro",
  "RemoteRef": "HEAD",
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  "Packaged": {
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    "User": "root"
  },
  "Author": "Valentin Gartiser [aut, cre, cph] (ORCID:\n<https://orcid.org/0000-0001-5320-374X>),\nMartin Maier [ctb] (ORCID: <https://orcid.org/0000-0002-7959-0108>),\nVerena Lang [ctb]",
  "Maintainer": "Valentin Gartiser <code@valentingartiser.de>",
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  "_created": "2026-06-06T08:07:35.000Z",
  "_published": "2026-06-06T08:11:46.297Z",
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  "_buildurl": "https://github.com/r-universe/valentingar/actions/runs/27056922234",
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  "_upstream": "https://github.com/valentingar/confluxpro",
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  "_selfowned": true,
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  "_rbuild": "4.6.0",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/ConFluxPro.html",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
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    "extra/readme.md",
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  "_homeurl": "https://github.com/valentingar/confluxpro",
  "_realowner": "valentingar",
  "_cranurl": true,
  "_releases": [
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      "version": "1.3.1",
      "date": "2025-07-10"
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  ],
  "_exports": [
    "alternate",
    "as_cfp_dat",
    "as_cfp_fgmod",
    "as_cfp_pfmod",
    "bootstrap_error",
    "calculate_bootstrap_error",
    "cfp_altapply",
    "cfp_altres",
    "cfp_dat",
    "cfp_DSD0_optim",
    "cfp_evenness_factor",
    "cfp_fgmod",
    "cfp_fgres",
    "cfp_funs",
    "cfp_gasdata",
    "cfp_gases",
    "cfp_id_cols",
    "cfp_known_flux_factor",
    "cfp_layered_profile",
    "cfp_layers_altmap",
    "cfp_layers_different",
    "cfp_layers_from",
    "cfp_layers_map",
    "cfp_modes",
    "cfp_n_runs",
    "cfp_og_model",
    "cfp_param",
    "cfp_parameter",
    "cfp_params_df",
    "cfp_pfmod",
    "cfp_pfres",
    "cfp_profile",
    "cfp_run_map",
    "cfp_runmap_type",
    "cfp_soilphys",
    "cfp_zero_flux",
    "cfp_zero_limits",
    "check_soilphys",
    "combine_models",
    "combine_models_by_reference",
    "complete_soilphys",
    "D0_massman",
    "dcdz_layered",
    "deepflux",
    "depth_structure",
    "discretize_depth",
    "DSD0_currie",
    "DSD0_linear",
    "DSD0_millington_quirk",
    "DSD0_moldrup",
    "efflux",
    "error_concentration",
    "error_efflux",
    "evaluate_models",
    "fg_flux",
    "filter",
    "flux",
    "harm",
    "make_bootstrap_model",
    "n_groups",
    "n_profiles",
    "nrmse",
    "plot_profile",
    "pro_flux",
    "prod_mod_conc",
    "prod_mod_flux",
    "prod_optim",
    "production",
    "rmse",
    "run_map",
    "scale_min_median",
    "season",
    "sobol_calc_indices",
    "sobol_run_map",
    "soilphys_layered",
    "split_by_group",
    "split_by_prof",
    "unique_gases"
  ],
  "_datasets": [
    {
      "name": "base_dat",
      "title": "Example cfp_dat object",
      "object": "base_dat",
      "class": [
        "cfp_dat",
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "gasdata",
      "title": "Example soil CO2 concentrations",
      "object": "gasdata",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "site",
        "Date",
        "depth",
        "x_ppm",
        "gas"
      ],
      "rows": 312,
      "table": true,
      "tojson": true
    },
    {
      "name": "layers_map",
      "title": "Example cfp_layers_map object",
      "object": "layers_map",
      "class": [
        "data.frame"
      ],
      "fields": [
        "site",
        "upper",
        "lower"
      ],
      "rows": 4,
      "table": true,
      "tojson": true
    },
    {
      "name": "soildiff",
      "title": "Example soil diffusion models",
      "object": "soildiff",
      "class": [
        "data.frame"
      ],
      "fields": [
        "site",
        "upper",
        "lower",
        "TPS",
        "a",
        "b"
      ],
      "rows": 8,
      "table": true,
      "tojson": true
    },
    {
      "name": "soilphys",
      "title": "Example cfp_soilphys object",
      "object": "soilphys",
      "class": [
        "data.frame"
      ],
      "fields": [
        "site",
        "TPS",
        "a",
        "b",
        "depth",
        "upper",
        "lower",
        "Date",
        "SWC",
        "t",
        "p",
        "AFPS",
        "DSD0",
        "gas",
        "D0",
        "DS",
        "c_air"
      ],
      "rows": 180,
      "table": true,
      "tojson": true
    },
    {
      "name": "soiltemp",
      "title": "Example soil temperature",
      "object": "soiltemp",
      "class": [
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "site",
        "Date",
        "depth",
        "t"
      ],
      "rows": 120,
      "table": true,
      "tojson": true
    },
    {
      "name": "soilwater",
      "title": "Example soil water content",
      "object": "soilwater",
      "class": [
        "rowwise_df",
        "tbl_df",
        "tbl",
        "data.frame"
      ],
      "fields": [
        "site",
        "Date",
        "upper",
        "lower",
        "SWC"
      ],
      "rows": 180,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "alternate",
      "title": "Run parameter variation",
      "topics": [
        "alternate",
        "alternate_model"
      ]
    },
    {
      "page": "base_dat",
      "title": "Example cfp_dat object",
      "topics": [
        "base_dat"
      ]
    },
    {
      "page": "bootstrap_error",
      "title": "Estimate model uncertainty",
      "topics": [
        "bootstrap_error",
        "bootstrap_error.cfp_altres",
        "bootstrap_error.cfp_dat",
        "bootstrap_error.cfp_fgmod",
        "bootstrap_error.cfp_pfmod",
        "calculate_bootstrap_error",
        "calculate_bootstrap_error.cfp_pfmod",
        "make_bootstrap_model",
        "make_bootstrap_model.cfp_pfmod"
      ]
    },
    {
      "page": "cfp_altapply",
      "title": "Apply a function over a list of models",
      "topics": [
        "cfp_altapply"
      ]
    },
    {
      "page": "cfp_dat",
      "title": "Model input data",
      "concept": [
        "data formats"
      ],
      "topics": [
        "as_cfp_dat",
        "as_cfp_dat.cfp_dat",
        "cfp_dat"
      ]
    },
    {
      "page": "cfp_fgmod",
      "title": "Model frame for fg_flux",
      "concept": [
        "model frames"
      ],
      "topics": [
        "cfp_fgmod"
      ]
    },
    {
      "page": "cfp_fgres",
      "title": "Model result of fg_flux",
      "concept": [
        "model frames"
      ],
      "topics": [
        "cfp_fgres"
      ]
    },
    {
      "page": "cfp_gasdata",
      "title": "Soil gas concentration data",
      "concept": [
        "data formats"
      ],
      "topics": [
        "cfp_gasdata",
        "cfp_gasdata.cfp_dat",
        "cfp_gasdata.data.frame"
      ]
    },
    {
      "page": "cfp_layered_profile",
      "title": "Object for layered soil profiles",
      "concept": [
        "data formats"
      ],
      "topics": [
        "cfp_layered_profile"
      ]
    },
    {
      "page": "cfp_layers_map",
      "title": "Model layers",
      "concept": [
        "data formats"
      ],
      "topics": [
        "cfp_layers_map",
        "cfp_layers_map.cfp_dat",
        "cfp_layers_map.data.frame"
      ]
    },
    {
      "page": "cfp_parameter",
      "title": "Get parameter descriptions and units",
      "topics": [
        "cfp_parameter"
      ]
    },
    {
      "page": "cfp_pfmod",
      "title": "Model frame for pro_flux",
      "concept": [
        "model frames"
      ],
      "topics": [
        "cfp_pfmod"
      ]
    },
    {
      "page": "cfp_pfres",
      "title": "Model result of pro_flux",
      "concept": [
        "model frames"
      ],
      "topics": [
        "cfp_pfres"
      ]
    },
    {
      "page": "cfp_profile",
      "title": "Object for soil profiles",
      "concept": [
        "data formats"
      ],
      "topics": [
        "cfp_profile"
      ]
    },
    {
      "page": "cfp_run_map",
      "title": "Create a run plan for parameter variation",
      "topics": [
        "cfp_run_map"
      ]
    },
    {
      "page": "cfp_soilphys",
      "title": "Soil physical parameters data",
      "concept": [
        "data formats"
      ],
      "topics": [
        "cfp_soilphys",
        "cfp_soilphys.cfp_dat",
        "cfp_soilphys.data.frame"
      ]
    },
    {
      "page": "check_soilphys",
      "title": "Check for complete and correct soil physical parameters",
      "concept": [
        "soilphys"
      ],
      "topics": [
        "check_soilphys"
      ]
    },
    {
      "page": "combine_models",
      "title": "Combine models",
      "topics": [
        "combine_models",
        "combine_models.cfp_altres",
        "combine_models.list",
        "combine_models_by_reference"
      ]
    },
    {
      "page": "complete_soilphys",
      "title": "(Re-)calculate soil physical parameters",
      "concept": [
        "soilphys"
      ],
      "topics": [
        "complete_soilphys"
      ]
    },
    {
      "page": "D0_massman",
      "title": "Calculate D0",
      "topics": [
        "D0_massman"
      ]
    },
    {
      "page": "deepflux",
      "title": "Extract flux rates from deep soil",
      "topics": [
        "deepflux"
      ]
    },
    {
      "page": "depth_structure",
      "title": "Unique layers depths",
      "topics": [
        "depth_structure",
        "depth_structure.cfp_dat",
        "depth_structure.cfp_layered_profile",
        "depth_structure.cfp_profile"
      ]
    },
    {
      "page": "discretize_depth",
      "title": "Interpolate over depth to layered profile",
      "concept": [
        "soilphys"
      ],
      "topics": [
        "discretize_depth",
        "discretize_depth.cfp_profile",
        "discretize_depth.data.frame"
      ]
    },
    {
      "page": "DSD0",
      "title": "Calculate DSD0",
      "topics": [
        "DSD0",
        "DSD0_currie",
        "DSD0_linear",
        "DSD0_millington_quirk",
        "DSD0_moldrup"
      ]
    },
    {
      "page": "efflux",
      "title": "Extract efflux rates",
      "topics": [
        "efflux",
        "efflux.cfp_altres",
        "efflux.cfp_fgres",
        "efflux.cfp_pfres"
      ]
    },
    {
      "page": "error_funs",
      "title": "Estimate model error",
      "topics": [
        "error_concentration",
        "error_concentration.cfp_altres",
        "error_concentration.cfp_fgres",
        "error_concentration.cfp_pfres",
        "error_efflux",
        "error_efflux.cfp_altres",
        "error_efflux.cfp_fgres",
        "error_efflux.cfp_pfres",
        "error_funs"
      ]
    },
    {
      "page": "evaluate_models",
      "title": "Evaluate model runs for calibration",
      "topics": [
        "evaluate_models",
        "evaluate_models.cfp_altres"
      ]
    },
    {
      "page": "extractors",
      "title": "Extract elements from an object",
      "topics": [
        "cfp_DSD0_optim",
        "cfp_evenness_factor",
        "cfp_funs",
        "cfp_gases",
        "cfp_id_cols",
        "cfp_known_flux_factor",
        "cfp_layers_altmap",
        "cfp_layers_different",
        "cfp_layers_from",
        "cfp_modes",
        "cfp_n_runs",
        "cfp_og_model",
        "cfp_og_model.cfp_altres",
        "cfp_param",
        "cfp_params_df",
        "cfp_runmap_type",
        "cfp_zero_flux",
        "cfp_zero_limits",
        "extractors"
      ]
    },
    {
      "page": "fg_flux",
      "title": "Flux-gradient method",
      "concept": [
        "flux models"
      ],
      "topics": [
        "fg_flux",
        "fg_flux.cfp_dat",
        "fg_flux.cfp_fgmod",
        "fg_flux.cfp_fgres"
      ]
    },
    {
      "page": "filter",
      "title": "Filter profiles",
      "topics": [
        "filter",
        "filter.cfp_dat"
      ]
    },
    {
      "page": "flux",
      "title": "Re-run model",
      "topics": [
        "flux"
      ]
    },
    {
      "page": "gasdata",
      "title": "Example soil CO2 concentrations",
      "topics": [
        "gasdata"
      ]
    },
    {
      "page": "harm",
      "title": "Harmonic mean",
      "topics": [
        "harm"
      ]
    },
    {
      "page": "layers_map",
      "title": "Example cfp_layers_map object",
      "topics": [
        "layers_map"
      ]
    },
    {
      "page": "utility",
      "title": "Get number of groups/profiles",
      "topics": [
        "n_groups",
        "n_profiles"
      ]
    },
    {
      "page": "plot_profile",
      "title": "Plot profiles",
      "topics": [
        "plot_profile"
      ]
    },
    {
      "page": "pro_flux",
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